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NEBNext® Ultra™ II FS DNA Library Prep with Sample Purification Beads

Catalog # Concentration Size List Price Quantity Your Price
E6177L 96 reactions $3,999.00
$3,599.10
E6177S 24 reactions $1,059.00
$953.10
Catalog # Size List Price Your Price
E6177L 96 reactions $3,999.00
$3,599.10
E6177S 24 reactions $1,059.00
$953.10
Catalog #
Qty:
 
*On-line ordering is for Canadian customers only. Web pricing is applicable only to orders placed online at www.neb.ca
You’ll be thrilled to pieces
 
Do you need a faster, more reliable solution for DNA fragmentation and library construction? The NEBNext® Ultra™ II FS DNA Library Prep Kit meets the dual challenges of constructing high quality libraries from ever-decreasing input amounts, and scalability of library construction.
 
The kit includes a new DNA fragmentation reagent, which is also combined with end repair and dA-tailing reagents, enabling these steps to be performed in the same tube, with no clean-ups or sample loss.
 
You’ll be thrilled to pieces with the result – a reliable, flexible, high-quality library prep that is fast and scalable.
 
  • Perform fragmentation, end repair and dA-tailing with a single enzyme mix 
  • Experience reliable fragmentation with a single protocol, regardless of DNA input amount or GC content 
  • Prepare high quality libraries from a wide range of input amounts: 100 pg–500 ng 
  • Generate high yields with increased reaction efficiencies and minimized sample loss 
  • Use with DNA in standard buffers (TE, Tris-HCl) and water 
  • Save time with a streamlined workflow: ~ 2.5 hours, with < 15 minutes hands-on time 
  • Vary incubation time to generate a wide range of insert sizes
  • Enjoy the reliability of SPRIselect® size selection and clean-up beads, supplied in just the amounts you need

 
See what others are saying about NEBNext Ultra II FS.

Also available without SPRIselect beads

 

 



The NEBNext® Ultra™ II FS DNA Library Prep Kit for Illumina provides a fragmentation system: a fast and reliable solution for DNA fragmentation and library construction. A new DNA fragmentation reagent is combined with end repair and dA-tailing reagents, allowing these steps to be performed in the same tube, with no clean-ups or sample loss. The same fragmentation protocol is used for any input amount (100 pg–500 ng), or GC content. The kit also includes the NEBNext Ultra II Ligation Master Mix for adaptor ligation, the NEBNext Ultra II Q5® Master Mix for uniform, high-fidelity library amplification, and the gold standard SPRIselect size selection and clean-up beads.  Please note that adaptors and primers are not included in the kit and are available separately.

For protocols including bisulfite converted DNA, we recommend the NEBNext Ultra II DNA Library Prep with Sample Purification Beads.

Features:

  • Fragmentation, end repair and dA-tailing reagents in a single enzyme mix 
  • A single fragmentation protocol, regardless of DNA input amount or GC content 
  • Input amounts: 100 pg–500 ng 
  • Input DNA can be in water, Tris or TE
  • Workflow: ~ 2.5 hours, with < 15 minutes hands-on time 
  • Includes SPRIselect size selection and clean-up beads

Download extensive performance data in our technical note. 
 
Also available without SPRIselect beads

For use with NEBNext Multiplex Oligos for Illumina (Unique Dual Index UMI Adaptors DNA Set 1) (NEB #E7395), refer to the Protocols tab for UMI Adaptors-specific guidance. 

 
 

Figure 1: NEBNext Ultra II FS DNA produces the highest yields, from a range of input amounts

Libraries were prepared from Human NA19240 genomic DNA using the input amounts and numbers of PCR cycles shown. For NEBNext Ultra II FS, a 20-minute fragmentation time was used. For Kapa™ HyperPlus libraries, input DNA was cleaned up with 3X beads prior to library construction, as recommended, and a 20-minute fragmentation time was used. Illumina® recommends 50 ng input for Nextera, and not an input range; therefore, only 50 ng was used in this experiment. “Covaris®” libraries were prepared by shearing each input amount in 1X TE Buffer to an insert size of ~200 bp using a Covaris instrument, followed by library construction using the NEBNext Ultra II DNA Library Prep Kit (NEB #E7645). Error bars indicate standard deviation for an average of 3–6 replicates performed by 2 independent users.
Figure 2: NEBNext Ultra II FS DNA provides consistent fragmentation regardless of input amount

Libraries were prepared from Human NA19240 genomic DNA using the input amounts shown. NEBNext Ultra II FS libraries were prepared using a 20-minute fragmentation time. For Kapa™ HyperPlus, input DNA was cleaned up with 3X beads prior to library construction, as recommended, and a 20-minute fragmentation time. Library size was assessed using the Agilent® Bioanalyzer®. Low input (1 ng and below) libraries were loaded on the Bioanalyzer without a dilution. High input libraries were loaded with a 1:5 dilution in 0.1X TE.
Figure 3: NEBNext Ultra II FS DNA provides uniform GC coverage for microbial genomic DNA over a broad range of GC composition

Libraries were prepared using 1 ng of a mix of genomic DNA samples from Haemophilus influenzae, Escherichia coli (K-12 MG1655), Rhodopseudomonas palustris and the library prep kits shown, with 9 PCR cycles for consistency across samples, and sequenced on an Illumina MiSeq®. NEBNext Ultra II FS libraries were prepared using a 20-minute fragmentation time. For Kapa HyperPlus libraries, input DNA was cleaned up with 3X beads prior to library construction, as recommended, followed by a 25-minute fragmentation time. “Covaris” libraries were prepared by shearing 1 ng of DNA  in 1X TE Buffer to an insert size of ~200 bp using a Covaris instrument, followed by library construction using the NEBNext Ultra II DNA Library Prep Kit (NEB #E7645). Reads were mapped using Bowtie 2.2.4 and GC coverage information was calculated using Picard’s CollectGCBiasMetrics (v1.117). Expected normalized coverage of 1.0 is indicated by the horizontal grey line, the number of 100 bp regions at each GC% is indicated by the vertical grey bars, and the colored lines represent the normalized coverage for each library.
Figure 4: ULTRA II FS produced 10-15x more DNA library compared with other methods - Data from Peter Ellis of the Wellcome Trust Sanger Institute

Human genomic DNA was subjected to DNA library construction using an existing DNA library construction workflow (CURRENT), NEB Ultra II or NEB Ultra II FS.  Adapter-Ligated libraries were amplified by PCR (4-12 cycles), purified and quantitated using the Agilent Bioanalyzer platform. Values obtained were used to normalize DNA library yield from 12 cycles of PCR.

View additional data  presented at AGBT by Peter Ellis, Senior Staff Scientist at the Wellcome Trust Sanger Institute. 

 

 


Reagents Supplied

The following reagents are supplied with this product:

NEB # Component Name Component # Stored at (°C) Amount Concentration
  NEBNext® Ultra™ II FS DNA Library Prep Kit for Illumina E7805S -20 1 x 24 reactions
  NEBNext® Sample Purification Beads E6178S 25 1 x 3.6 ml
  NEBNext® Ultra™ II FS DNA Library Prep Kit for Illumina E7805L -20 1 x 96 reactions
  NEBNext® Sample Purification Beads E6178L 25 1 x 14.4 ml

Properties & Usage

Materials Required but not Supplied

  • 80% Ethanol (freshly prepared)
  • Nuclease-free water
  • 0.2 ml thin wall PCR tubes
  • NEBNext Singleplex or Multiplex Oligos for Illumina (NEB #E7350, #E7335, #E7500, #E6609, #E7710, #E7730 or #E7600)
  • Magnetic rack or plate (e.g., NEBNext® Magnetic Separation Rack (NEB #S1515S), Alpaqua ® 96S Super Magnet Plate (#A001322), or equivalent)
  • PCR machine
  • Vortex
  • Microcentrifuge
  • For NEB #E7805 only: SPRIselect® Reagent Kit (Beckman Coulter, Inc. #B23317) or AMPure® XP Beads (Beckman Coulter, Inc. #A63881)
  • Optional: 10 mM Tris-HCl, pH 8.0 with 10 mM NaCl (for adaptor dilution of DNA input < 100 ng)


Citations
Additional Citations
  • Ellis P, et al. (2021) Reliable detection of somatic mutation in solid tissues by laser-capture microdissection and low-input DNA sequencing. Nat Protoc 16, 841-871. DOI: 10.1038/s41596-020-00437-6
Quality Control Assay
Quality Control tests are performed on each new lot of NEB product to meet the specifications designated for it. Specifications and individual lot data from the tests that are performed for this particular product can be found and downloaded on the Product Specification Sheet, Certificate of Analysis, data card or product manual. Further information regarding NEB product quality can be found here.
Specifications
The Specification sheet is a document that includes the storage temperature, shelf life and the specifications designated for the product. The following file naming structure is used to name these document files: [Product Number]_[Size]_[Version]
Safety Data Sheets
Legal And Disclaimer

Products and content are covered by one or more patents, trademarks and/or copyrights owned or controlled by New England Biolabs, Inc (NEB). The use of trademark symbols does not necessarily indicate that the name is trademarked in the country where it is being read; it indicates where the content was originally developed. The use of this product may require the buyer to obtain additional third-party intellectual property rights for certain applications. For more information, please email busdev@neb.com.

This product is intended for research purposes only. This product is not intended to be used for therapeutic or diagnostic purposes in humans or animals.

New England Biolabs (NEB) is committed to practicing ethical science – we believe it is our job as researchers to ask the important questions that when answered will help preserve our quality of life and the world that we live in. However, this research should always be done in safe and ethical manner. Learn more.

This product is licensed for research and commercial use from Bio-Rad Laboratories, Inc., under U.S. Pat. Nos. 6,627,424, 7,541,170, 7,670,808, 7,666,645, and corresponding patents in other countries. No rights are granted for use of the product for Digital PCR or real-time PCR applications, with the exception of quantification in Next Generation Sequencing workflows.

For additional information or to inquire about commercial use, please contact busdev@neb.com.

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